diff --git a/classroom_data/marker_genes.json b/classroom_data/marker_genes.json new file mode 100644 index 0000000..2cf64f5 --- /dev/null +++ b/classroom_data/marker_genes.json @@ -0,0 +1,80 @@ +{ + "CD14+ Mono": ["FCN1", "CD14"], + "CD16+ Mono": ["TCF7L2", "FCGR3A", "LYN"], + "ID2-hi myeloid prog": [ + "CD14", + "ID2", + "VCAN", + "S100A9", + "CLEC12A", + "KLF4", + "PLAUR" + ], + "cDC1": ["CLEC9A", "CADM1"], + "cDC2": [ + "CST3", + "COTL1", + "LYZ", + "DMXL2", + "CLEC10A", + "FCER1A" + ], + "Normoblast": ["SLC4A1", "SLC25A37", "HBB", "HBA2", "HBA1", "TFRC"], + "Erythroblast": ["MKI67", "HBA1", "HBB"], + "Proerythroblast": [ + "CDK6", + "SYNGR1", + "HBM", + "GYPA" + ], + "NK": ["GNLY", "NKG7", "CD247", "GRIK4", "FCER1G", "TYROBP", "KLRG1", "FCGR3A"], + "ILC": ["ID2", "PLCG2", "GNLY", "SYNE1"], + "Lymph prog": [ + "VPREB1", + "MME", + "EBF1", + "SSBP2", + "BACH2", + "CD79B", + "IGHM", + "PAX5", + "PRKCE", + "DNTT", + "IGLL1" + ], + "Naive CD20+ B": ["MS4A1", "IL4R", "IGHD", "FCRL1", "IGHM"], + "B1 B": [ + "MS4A1", + "SSPN", + "ITGB1", + "EPHA4", + "COL4A4", + "PRDM1", + "IRF4", + "CD38", + "XBP1", + "PAX5", + "BCL11A", + "BLK", + "IGHD", + "IGHM", + "ZNF215" + ], + "Transitional B": ["MME", "CD38", "CD24", "ACSM3", "MSI2"], + "Plasma cells": ["MZB1", "HSP90B1", "FNDC3B", "PRDM1", "IGKC", "JCHAIN"], + "Plasmablast": ["XBP1", "RF4", "PRDM1", "PAX5"], + "CD4+ T activated": ["CD4", "IL7R", "TRBC2", "ITGB1"], + "CD4+ T naive": ["CD4", "IL7R", "TRBC2", "CCR7"], + "CD8+ T": ["CD8A", "CD8B", "GZMK", "GZMA", "CCL5", "GZMB", "GZMH", "GZMA"], + "T activation": ["CD69", "CD38"], + "T naive": ["LEF1", "CCR7", "TCF7"], + "pDC": ["GZMB", "IL3RA", "COBLL1", "TCF4"], + "G/M prog": ["MPO", "BCL2", "KCNQ5", "CSF3R"], + "HSC": ["NRIP1", "MECOM", "PROM1", "NKAIN2", "CD34"], + "MK/E prog": [ + "ZNF385D", + "ITGA2B", + "RYR3", + "PLCB1" + ] +} \ No newline at end of file