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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Python 2.1k 580

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction

    Python 588 280

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Python 427 268

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 241 54

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 185 70

  6. minimodel minimodel Public

    minimodels!

    Jupyter Notebook 3 3

Repositories

Showing 10 of 23 repositories
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Python 427 GPL-3.0 268 31 12 Updated Feb 9, 2026
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Python 2,061 BSD-3-Clause 580 65 (2 issues need help) 26 Updated Feb 9, 2026
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 588 GPL-3.0 281 15 1 Updated Jan 28, 2026
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 185 GPL-3.0 70 16 3 Updated Jan 26, 2026
  • critical_init Public

    code for Pachitariu et al 2025

    MouseLand/critical_init’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 22, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS 0 1 0 0 Updated Nov 13, 2025
  • course-materials Public
    MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 3 0 0 Updated Aug 26, 2025
  • minimodel Public

    minimodels!

    MouseLand/minimodel’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 3 0 0 Updated Jul 31, 2025
  • zhong-et-al-2025 Public

    code to make figures from Zhong et al, 2025

    MouseLand/zhong-et-al-2025’s past year of commit activity
    Jupyter Notebook 7 GPL-3.0 3 0 0 Updated Jul 6, 2025
  • neuropop Public

    analysis tools for large-scale neural recordings

    MouseLand/neuropop’s past year of commit activity
    Python 16 GPL-3.0 2 0 0 Updated Apr 4, 2025
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