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Simulate linked depth by simulating reads#26

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MoiColl wants to merge 4 commits intomainfrom

Commits on Aug 22, 2024

create functions linked_depth and independent_depth

MoiColl
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grahamgower
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correct transposed issue in linked_depth() and assert dimentions between DP and gm

MoiColl
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grahamgower
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Making read depth linked calculation as a circular sequence and refining other functions such as calculating Major and minor alleles based on Genotype Likelihoods

MoiColl
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grahamgower
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Commits on Aug 28, 2024

Improving the Major-minor identification function, making the GL normalization its own function and rearanging the indeces in the GL output in the subset_GL function to correspond to the indeces in…
MoiColl
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